Alper Yilmaz

Latest

• Effect of SARS-CoV-2 infection on host competing endogenous RNA and miRNA network
• Convolutional Neural Network Approach to Predict Tumor Samples Using Gene Expression Data
• A New Network-Based Tool to Analyse Competing Endogenous RNAs
• Network based multifactorial modelling of miRNA-target interactions
• Assessment of mutation susceptibility in DNA sequences with word vectors
• Batch Analyis of RNA-Seq Data with Docker in AWS Cloud
• Breast cancer gene expression profile analysis in terms of genes specific to non-breast tissues
• Multifactorial Modelling of MicroRNA Associated Repression and Its Subsequent Effects on Gene Expression in MicroRNA:Target Network
• Prebiotics and Probiotics:Break the ‘Self-Domino Effect’ for obesity Treatment
• Generating Lossless Compression Of Genome Scale K-Mer Frequency Table As Raster Image
• Identification of Tissue Specific Genes and Assessment of Their Intersection with Differentialy Expressed Genes in Cancer Data to Understand Tumor Heterogeneity in silico
• Rigorous Identification of Tissue Specific Genes in silico
• Robust and Rigorous Classification of Tissue Specific Genes
• Survey of Chimeric mRNAs in HIV Infected Patient RNA-SEQ Data
• Survey of Chimeric mRNAs in HIV Infected Patient RNA-SEQ Data
• What is the Relationship Between Cancer DEGs and Tissue Specific Genes
• A combined SVM and Markov model approach for splice site identification
• A novel method for splice sites prediction using sequence component and Hidden Markov model
• Prediction of splice site using AdaBoost with a new sequence encoding approach
• Protein engineering insights from metagenomes of diverse bacteria
• Utilization of Multiple Mapped Sequences in Next Generation Sequencing Especially in Chip-Seq Experiments
• Important biological information uncovered in previously unaligned reads from chromatin immunoprecipitation experiments (ChIP-Seq)
• Molecular basis for the action of a dietary flavonoid revealed by the comprehensive identification of apigenin human targets
• Unraveling the KNOTTED1 regulatory network in maize meristems
• A genome-wide regulatory framework identifies maize pericarp color1 controlled genes
• Thriving under stress: selective translation of HIV-1 structural protein mRNA during Vpr-mediated impairment of eIF4E translation activity
• AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
• Encyclopedias of DNA Elements for Plant Genomes
• POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data
• Components and mechanisms of regulation of gene expression
• The word landscape of the non-coding segments of the Arabidopsis thaliana genome
• Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies
• Discovery of Regulatory Networks in Plants by Linking Promoter and Transcription Factor Databases
• GRASSIUS: a platform for comparative regulatory genomics across the grasses
• RNA helicase A interacts with divergent lymphotropic retroviruses and promotes translation of human T-cell leukemia virus type 1
• Coordinate enhancement of transgene transcription and translation in a lentiviral vector
• Retrovirus Translation Initiation: Issues and Hypotheses Derived from Study of HIV-1